IL_6EM1_070

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EM1_070 not in the Motif Atlas

Homologous match to IL_5TBW_135

Geometric discrepancy: 0.2755

The information below is about IL_5TBW_135

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6EM1|1|1|A|3342
6EM1|1|1|G|3343
6EM1|1|1|A|3344
6EM1|1|1|G|3345
*
6EM1|1|1|C|3360
6EM1|1|1|G|3361
6EM1|1|1|A|3362
6EM1|1|1|U|3363

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain u

Ribosome biogenesis protein RLP24