IL_6EM1_072
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EM1_072 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.1435
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
6EM1|1|2|A|44
6EM1|1|2|C|45
6EM1|1|2|G|46
6EM1|1|2|C|47
6EM1|1|2|A|48
6EM1|1|2|G|49
6EM1|1|2|C|50
6EM1|1|2|G|51
6EM1|1|2|A|52
6EM1|1|2|A|53
6EM1|1|2|A|54
6EM1|1|2|U|55
6EM1|1|2|G|56
6EM1|1|2|C|57
6EM1|1|2|G|58
6EM1|1|2|A|59
6EM1|1|2|U|60
6EM1|1|2|A|61
6EM1|1|2|C|62
6EM1|1|2|G|63
6EM1|1|2|U|64
*
6EM1|1|2|A|96
6EM1|1|2|A|97
6EM1|1|2|U|98
6EM1|1|2|C|99
6EM1|1|2|U|100
Current chains
- Chain 2
- 5.8S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain v
- Nucleolar protein 16
- Chain x
- Ribosome production factor 1
Coloring options: