IL_6EM1_077

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCU*GA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EM1_077 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.2888

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6EM1|1|6|U|36
6EM1|1|6|C|37
6EM1|1|6|U|38
*
6EM1|1|6|G|42
6EM1|1|6|A|43

Current chains

Chain 6

5.8S ribosomal RNA

Nearby chains

Chain K

Proteasome-interacting protein CIC1

Chain o

Ribosome biogenesis protein 15