IL_6EML_010

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EML_010 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1153

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6EML|1|2|U|117
6EML|1|2|U|118
6EML|1|2|A|119
6EML|1|2|U|120
6EML|1|2|U|121
6EML|1|2|U|122
*
6EML|1|2|A|295
6EML|1|2|U|296
6EML|1|2|U|297
6EML|1|2|C|298
6EML|1|2|A|299

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain V

40S ribosomal protein S8-A