IL_6EML_020

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EML_020 not in the Motif Atlas

Homologous match to IL_4V88_403

Geometric discrepancy: 0.3765

The information below is about IL_4V88_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85724.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

2

Unit IDs

6EML|1|2|U|318
6EML|1|2|U|319
6EML|1|2|U|320
6EML|1|2|C|321
6EML|1|2|G|322
6EML|1|2|A|323
*
6EML|1|2|U|345
6EML|1|2|G|346

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain V

40S ribosomal protein S8-A

Chain X

40S ribosomal protein S11-A