IL_6EML_038

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGCCGGU*GGAUUUCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EML|1|2|G|651
6EML|1|2|G|652
6EML|1|2|C|653
6EML|1|2|C|654
6EML|1|2|G|655
6EML|1|2|G|656
6EML|1|2|U|657
*
6EML|1|2|G|676
6EML|1|2|G|677
6EML|1|2|A|678
6EML|1|2|U|679
6EML|1|2|U|680
6EML|1|2|U|681
6EML|1|2|C|682
6EML|1|2|C|683

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein S9-A