IL_6EML_047

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6EML|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EML_047 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.182

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6EML|1|2|U|893
6EML|1|2|U|894
6EML|1|2|G|895
6EML|1|2|U|896
6EML|1|2|C|897
6EML|1|2|A|898
6EML|1|2|G|899
*
6EML|1|2|C|910
6EML|1|2|U|911
6EML|1|2|U|912
6EML|1|2|G|913
6EML|1|2|G|914
6EML|1|2|A|915
6EML|1|2|U|916
6EML|1|2|U|917
6EML|1|2|U|918
6EML|1|2|A|919

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S1-A

Chain Z

40S ribosomal protein S14-A