IL_6EML_058

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUAAUUUGGAAACUCAC*GGCCG

Length

23 nucleotides

Bulged bases

6EML|1|2|G|1188, 6EML|1|2|G|1201

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EML|1|2|C|1180
6EML|1|2|U|1181
6EML|1|2|U|1182
6EML|1|2|A|1183
6EML|1|2|A|1184
6EML|1|2|U|1185
6EML|1|2|U|1186
6EML|1|2|U|1187
6EML|1|2|G|1188
6EML|1|2|G|1201
6EML|1|2|A|1202
6EML|1|2|A|1203
6EML|1|2|A|1204
6EML|1|2|C|1205
6EML|1|2|U|1206
6EML|1|2|C|1207
6EML|1|2|A|1208
6EML|1|2|C|1209
*
6EML|1|2|G|1454
6EML|1|2|G|1455
6EML|1|2|C|1456
6EML|1|2|C|1457
6EML|1|2|G|1458

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S15

Chain H

40S ribosomal protein S18-A

Chain r

Serine/threonine-protein kinase RIO2

Chain t

Ribosome biogenesis protein TSR1