IL_6EML_060

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAUAAGGA*UUUU

Length

12 nucleotides

Bulged bases

6EML|1|2|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EML|1|2|A|1223
6EML|1|2|A|1224
6EML|1|2|U|1225
6EML|1|2|A|1226
6EML|1|2|A|1227
6EML|1|2|G|1228
6EML|1|2|G|1229
6EML|1|2|A|1230
*
6EML|1|2|U|1257
6EML|1|2|U|1258
6EML|1|2|U|1259
6EML|1|2|U|1260

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S12

Chain N

Ubiquitin-40S ribosomal protein S31

Chain e

Essential nuclear protein 1