IL_6EML_063

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6EML|1|2|U|1269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EML_063 not in the Motif Atlas

Geometric match to IL_4LFB_042

Geometric discrepancy: 0.1829

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

6EML|1|2|G|1268
6EML|1|2|U|1269
6EML|1|2|G|1270
*
6EML|1|2|C|1440
6EML|1|2|C|1441

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain e

Essential nuclear protein 1

Chain t

Ribosome biogenesis protein TSR1