IL_6EML_064

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

6EML|1|2|G|1273, 6EML|1|2|C|1274

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EML_064 not in the Motif Atlas

Geometric match to IL_5ZTM_001

Geometric discrepancy: 0.3385

The information below is about IL_5ZTM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6EML|1|2|U|1272
6EML|1|2|G|1273
6EML|1|2|C|1274
6EML|1|2|A|1275
6EML|1|2|U|1276
*
6EML|1|2|A|1436
6EML|1|2|U|1437
6EML|1|2|G|1438

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain e

Essential nuclear protein 1

Chain t

Ribosome biogenesis protein TSR1