3D structure

PDB id
6ENJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGAACUAGG*CUGUC
Length
14 nucleotides
Bulged bases
6ENJ|1|A|G|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ENJ_186 not in the Motif Atlas
Homologous match to IL_4WF9_117
Geometric discrepancy: 0.1357
The information below is about IL_4WF9_117
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_80252.1
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
10

Unit IDs

6ENJ|1|A|G|1666
6ENJ|1|A|G|1667
6ENJ|1|A|A|1668
6ENJ|1|A|A|1669
6ENJ|1|A|C|1670
6ENJ|1|A|U|1671
6ENJ|1|A|A|1672
6ENJ|1|A|G|1673
6ENJ|1|A|G|1674
*
6ENJ|1|A|C|1990
6ENJ|1|A|U|1991
6ENJ|1|A|G|1992
6ENJ|1|A|U|1993
6ENJ|1|A|C|1994

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain K
50S ribosomal protein L14

Coloring options:


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