3D structure

PDB id
6ENJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UCGAA*UGG
Length
8 nucleotides
Bulged bases
6ENJ|1|a|G|64, 6ENJ|1|a|A|65
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ENJ_201 not in the Motif Atlas
Geometric match to IL_7DLZ_003
Geometric discrepancy: 0.3337
The information below is about IL_7DLZ_003
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

6ENJ|1|a|U|62
6ENJ|1|a|C|63
6ENJ|1|a|G|64
6ENJ|1|a|A|65
6ENJ|1|a|A|66
*
6ENJ|1|a|U|103
6ENJ|1|a|G|104
6ENJ|1|a|G|105

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain t
30S ribosomal protein S20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.248 s