IL_6ERI_033

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCCCUAAAUG*CUG

Length

13 nucleotides

Bulged bases

6ERI|1|AA|U|1040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_033 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.2287

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6ERI|1|AA|C|1032
6ERI|1|AA|C|1033
6ERI|1|AA|C|1034
6ERI|1|AA|C|1035
6ERI|1|AA|U|1036
6ERI|1|AA|A|1037
6ERI|1|AA|A|1038
6ERI|1|AA|A|1039
6ERI|1|AA|U|1040
6ERI|1|AA|G|1041
*
6ERI|1|AA|C|1176
6ERI|1|AA|U|1177
6ERI|1|AA|G|1178

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AJ

50S ribosomal protein L13, chloroplastic

Chain AQ

50S ribosomal protein L20, chloroplastic

Chain Af

50S ribosomal protein 6, chloroplastic