IL_6ERI_034

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUCAGUG*CUAAG

Length

12 nucleotides

Bulged bases

6ERI|1|AA|A|1170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_034 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.1462

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6ERI|1|AA|C|1046
6ERI|1|AA|U|1047
6ERI|1|AA|C|1048
6ERI|1|AA|A|1049
6ERI|1|AA|G|1050
6ERI|1|AA|U|1051
6ERI|1|AA|G|1052
*
6ERI|1|AA|C|1167
6ERI|1|AA|U|1168
6ERI|1|AA|A|1169
6ERI|1|AA|A|1170
6ERI|1|AA|G|1171

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AJ

50S ribosomal protein L13, chloroplastic

Chain Ae

50S ribosomal protein L36, chloroplastic