IL_6ERI_035
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAUAAAG*CGAAGAUGAACGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 6ERI|1|AA|A|1155, 6ERI|1|AA|U|1158
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ERI_035 not in the Motif Atlas
- Homologous match to IL_7A0S_037
- Geometric discrepancy: 0.4524
- The information below is about IL_7A0S_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
6ERI|1|AA|G|1052
6ERI|1|AA|A|1053
6ERI|1|AA|U|1054
6ERI|1|AA|A|1055
6ERI|1|AA|A|1056
6ERI|1|AA|A|1057
6ERI|1|AA|G|1058
*
6ERI|1|AA|C|1152
6ERI|1|AA|G|1153
6ERI|1|AA|A|1154
6ERI|1|AA|A|1155
6ERI|1|AA|G|1156
6ERI|1|AA|A|1157
6ERI|1|AA|U|1158
6ERI|1|AA|G|1159
6ERI|1|AA|A|1160
6ERI|1|AA|A|1161
6ERI|1|AA|C|1162
6ERI|1|AA|G|1163
6ERI|1|AA|G|1164
6ERI|1|AA|G|1165
6ERI|1|AA|G|1166
6ERI|1|AA|C|1167
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AD
- 50S ribosomal protein L3, chloroplastic
- Chain AJ
- 50S ribosomal protein L13, chloroplastic
- Chain AM
- 50S ribosomal protein L16, chloroplastic
- Chain Ae
- 50S ribosomal protein L36, chloroplastic
- Chain Af
- 50S ribosomal protein 6, chloroplastic
- Chain Ax
- 5S ribosomal RNA; 5S rRNA
Coloring options: