IL_6ERI_037

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

6ERI|1|AA|A|1074

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_037 not in the Motif Atlas

Homologous match to IL_7RQB_042

Geometric discrepancy: 0.3557

The information below is about IL_7RQB_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.4

Basepair signature

cWW-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6ERI|1|AA|C|1071
6ERI|1|AA|A|1072
6ERI|1|AA|G|1073
6ERI|1|AA|A|1074
6ERI|1|AA|G|1075
6ERI|1|AA|A|1076
6ERI|1|AA|C|1077
6ERI|1|AA|A|1078
6ERI|1|AA|G|1079
*
6ERI|1|AA|U|1136
6ERI|1|AA|C|1137
6ERI|1|AA|G|1138
6ERI|1|AA|A|1139
6ERI|1|AA|G|1140

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AG

50S ribosomal protein L6, chloroplastic