IL_6ERI_040

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6ERI|1|AA|A|1116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_040 not in the Motif Atlas

Homologous match to IL_7RQB_044

Geometric discrepancy: 0.2425

The information below is about IL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ERI|1|AA|G|1115
6ERI|1|AA|A|1116
6ERI|1|AA|G|1117
6ERI|1|AA|U|1118
6ERI|1|AA|G|1119
*
6ERI|1|AA|C|1128
6ERI|1|AA|U|1129
6ERI|1|AA|C|1130

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain Ae

50S ribosomal protein L36, chloroplastic