IL_6ERI_041

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGU*AGCG

Length

7 nucleotides

Bulged bases

6ERI|1|AA|G|1269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_041 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.1153

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

6ERI|1|AA|C|1217
6ERI|1|AA|G|1218
6ERI|1|AA|U|1219
*
6ERI|1|AA|A|1268
6ERI|1|AA|G|1269
6ERI|1|AA|C|1270
6ERI|1|AA|G|1271

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L4, chloroplastic

Chain AL

50S ribosomal protein L15, chloroplastic

Chain AQ

50S ribosomal protein L20, chloroplastic