IL_6ERI_044

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AC*GUU

Length

5 nucleotides

Bulged bases

6ERI|1|AA|U|1254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_044 not in the Motif Atlas

Geometric match to IL_2R8S_004

Geometric discrepancy: 0.1789

The information below is about IL_2R8S_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

6ERI|1|AA|A|1236
6ERI|1|AA|C|1237
*
6ERI|1|AA|G|1253
6ERI|1|AA|U|1254
6ERI|1|AA|U|1255

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AQ

50S ribosomal protein L20, chloroplastic

Chain AS

50S ribosomal protein L22, chloroplastic