IL_6ERI_045

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6ERI|1|AA|U|1241

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_045 not in the Motif Atlas

Homologous match to IL_7RQB_048

Geometric discrepancy: 0.4016

The information below is about IL_7RQB_048

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6ERI|1|AA|G|1240
6ERI|1|AA|U|1241
6ERI|1|AA|G|1242
*
6ERI|1|AA|C|1249
6ERI|1|AA|C|1250

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AQ

50S ribosomal protein L20, chloroplastic

Chain AR

50S ribosomal protein L21, chloroplastic