IL_6ERI_046

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGAGUAA*UGAAAUA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_046 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0946

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6ERI|1|AA|U|1283
6ERI|1|AA|U|1284
6ERI|1|AA|G|1285
6ERI|1|AA|A|1286
6ERI|1|AA|G|1287
6ERI|1|AA|U|1288
6ERI|1|AA|A|1289
6ERI|1|AA|A|1290
*
6ERI|1|AA|U|2025
6ERI|1|AA|G|2026
6ERI|1|AA|A|2027
6ERI|1|AA|A|2028
6ERI|1|AA|A|2029
6ERI|1|AA|U|2030
6ERI|1|AA|A|2031

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L4, chloroplastic

Chain AS

50S ribosomal protein L22, chloroplastic

Chain Aa

50S ribosomal protein L32, chloroplastic