IL_6ERI_050

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_050 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.1914

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6ERI|1|AA|U|1378
6ERI|1|AA|C|1379
6ERI|1|AA|A|1380
6ERI|1|AA|G|1381
6ERI|1|AA|G|1382
*
6ERI|1|AA|C|1391
6ERI|1|AA|G|1392
6ERI|1|AA|U|1393
6ERI|1|AA|A|1394
6ERI|1|AA|G|1395

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2, chloroplastic

Chain AX

50S ribosomal protein L28, chloroplastic

Chain Ac

50S ribosomal protein L34, chloroplastic