IL_6ERI_061

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACAAC*GGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_061 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.1107

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6ERI|1|AA|G|1687
6ERI|1|AA|A|1688
6ERI|1|AA|C|1689
6ERI|1|AA|A|1690
6ERI|1|AA|A|1691
6ERI|1|AA|C|1692
*
6ERI|1|AA|G|2018
6ERI|1|AA|G|2019
6ERI|1|AA|C|2020

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AB

4.5S ribosomal RNA

Chain AD

50S ribosomal protein L3, chloroplastic

Chain AN

50S ribosomal protein L17, chloroplastic