IL_6ERI_067

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCAAAG*CCAUGUAUG

Length

16 nucleotides

Bulged bases

6ERI|1|AA|A|1811, 6ERI|1|AA|U|1826, 6ERI|1|AA|U|1830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_067 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0956

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6ERI|1|AA|C|1808
6ERI|1|AA|G|1809
6ERI|1|AA|C|1810
6ERI|1|AA|A|1811
6ERI|1|AA|A|1812
6ERI|1|AA|A|1813
6ERI|1|AA|G|1814
*
6ERI|1|AA|C|1823
6ERI|1|AA|C|1824
6ERI|1|AA|A|1825
6ERI|1|AA|U|1826
6ERI|1|AA|G|1827
6ERI|1|AA|U|1828
6ERI|1|AA|A|1829
6ERI|1|AA|U|1830
6ERI|1|AA|G|1831

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2, chloroplastic

Chain BA

Small subunit ribosomal RNA; SSU rRNA