IL_6ERI_078

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

6ERI|1|AA|U|2082

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_078 not in the Motif Atlas

Homologous match to IL_7RQB_080

Geometric discrepancy: 0.0765

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

6ERI|1|AA|A|2081
6ERI|1|AA|U|2082
6ERI|1|AA|G|2083
*
6ERI|1|AA|C|2459
6ERI|1|AA|U|2460

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L4, chloroplastic

Chain AL

50S ribosomal protein L15, chloroplastic