IL_6ERI_081

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_081 not in the Motif Atlas

Geometric match to IL_4WF9_083

Geometric discrepancy: 0.1737

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6ERI|1|AA|G|2108
6ERI|1|AA|C|2109
6ERI|1|AA|U|2110
*
6ERI|1|AA|A|2207
6ERI|1|AA|U|2208
6ERI|1|AA|U|2209

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2, chloroplastic

Chain AH

50S ribosomal protein L9, chloroplastic