IL_6ERI_090

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_090 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1628

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6ERI|1|AA|C|2483
6ERI|1|AA|C|2484
6ERI|1|AA|A|2485
6ERI|1|AA|A|2486
6ERI|1|AA|G|2487
*
6ERI|1|AA|C|2497
6ERI|1|AA|G|2498
6ERI|1|AA|A|2499
6ERI|1|AA|C|2500
6ERI|1|AA|G|2501

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AM

50S ribosomal protein L16, chloroplastic

Chain Ae

50S ribosomal protein L36, chloroplastic