IL_6ERI_092

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6ERI|1|AA|G|2593, 6ERI|1|AA|A|2594

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_092 not in the Motif Atlas

Homologous match to IL_7RQB_097

Geometric discrepancy: 0.1164

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

6ERI|1|AA|C|2527
6ERI|1|AA|U|2528
6ERI|1|AA|C|2529
*
6ERI|1|AA|G|2591
6ERI|1|AA|U|2592
6ERI|1|AA|G|2593
6ERI|1|AA|A|2594
6ERI|1|AA|G|2595

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3, chloroplastic

Chain Aa

50S ribosomal protein L32, chloroplastic