IL_6ERI_094

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

6ERI|1|AA|A|2559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_094 not in the Motif Atlas

Homologous match to IL_7RQB_099

Geometric discrepancy: 0.1251

The information below is about IL_7RQB_099

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.3

Basepair signature

cWW-tSH-cWW

Number of instances in this motif group

10

Unit IDs

6ERI|1|AA|U|2539
6ERI|1|AA|G|2540
*
6ERI|1|AA|C|2557
6ERI|1|AA|A|2558
6ERI|1|AA|A|2559
6ERI|1|AA|G|2560

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AJ

50S ribosomal protein L13, chloroplastic

Chain Ae

50S ribosomal protein L36, chloroplastic