IL_6ERI_111
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGACGAUAC*GAAAAAUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ERI_111 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1623
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6ERI|1|Ax|U|71
6ERI|1|Ax|G|72
6ERI|1|Ax|A|73
6ERI|1|Ax|C|74
6ERI|1|Ax|G|75
6ERI|1|Ax|A|76
6ERI|1|Ax|U|77
6ERI|1|Ax|A|78
6ERI|1|Ax|C|79
*
6ERI|1|Ax|G|98
6ERI|1|Ax|A|99
6ERI|1|Ax|A|100
6ERI|1|Ax|A|101
6ERI|1|Ax|A|102
6ERI|1|Ax|A|103
6ERI|1|Ax|U|104
6ERI|1|Ax|A|105
6ERI|1|Ax|G|106
Current chains
- Chain Ax
- 5S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AM
- 50S ribosomal protein L16, chloroplastic
- Chain AW
- 50S ribosomal protein L27, chloroplastic
Coloring options: