IL_6ERI_129

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAAG*CGGUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_129 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.129

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6ERI|1|BA|A|418
6ERI|1|BA|G|419
6ERI|1|BA|A|420
6ERI|1|BA|A|421
6ERI|1|BA|G|422
*
6ERI|1|BA|C|432
6ERI|1|BA|G|433
6ERI|1|BA|G|434
6ERI|1|BA|U|435
6ERI|1|BA|A|436
6ERI|1|BA|U|437

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S4, chloroplastic

Chain BP

30S ribosomal protein S16, chloroplastic