IL_6ERI_162
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAUC*GUGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ERI_162 not in the Motif Atlas
- Homologous match to IL_5J7L_056
- Geometric discrepancy: 0.25
- The information below is about IL_5J7L_056
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6ERI|1|BA|C|1208
6ERI|1|BA|G|1209
6ERI|1|BA|A|1210
6ERI|1|BA|U|1211
6ERI|1|BA|C|1212
*
6ERI|1|BA|G|1221
6ERI|1|BA|U|1222
6ERI|1|BA|G|1223
6ERI|1|BA|A|1224
6ERI|1|BA|G|1225
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BN
- 30S ribosomal protein S14, chloroplastic
- Chain BS
- 30S ribosomal protein S19, chloroplastic
- Chain BW
- 30S ribosomal protein S31, chloroplastic
Coloring options: