IL_6ERI_177

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

6ERI|1|AA|U|1040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_177 not in the Motif Atlas

Homologous match to IL_7A0S_035

Geometric discrepancy: 0.2293

The information below is about IL_7A0S_035

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

6ERI|1|AA|A|1039
6ERI|1|AA|U|1040
6ERI|1|AA|G|1041
*
6ERI|1|AA|C|1176
6ERI|1|AA|U|1177

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AJ

50S ribosomal protein L13, chloroplastic

Chain AQ

50S ribosomal protein L20, chloroplastic

Chain Af

50S ribosomal protein 6, chloroplastic