IL_6ERI_179

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_179 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0815

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6ERI|1|AA|G|1702
6ERI|1|AA|G|1703
6ERI|1|AA|A|1704
6ERI|1|AA|A|1705
6ERI|1|AA|C|1706
6ERI|1|AA|U|1707
6ERI|1|AA|C|1708
6ERI|1|AA|G|1709
6ERI|1|AA|G|1710
*
6ERI|1|AA|C|2004
6ERI|1|AA|U|2005
6ERI|1|AA|G|2006
6ERI|1|AA|U|2007
6ERI|1|AA|C|2008

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3, chloroplastic

Chain AK

50S ribosomal protein L14, chloroplastic