IL_6EZ0_066

3D structure

PDB id

6EZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific phosphorothioate substitution within domain 6 of a group II intron ribozyme leads to changes in local structure and metal ion binding

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GG*(U37)A(U37)

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: U37

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EZ0_066 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.2402

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

6EZ0|18|A|G|7
6EZ0|18|A|G|8
*
6EZ0|18|A|U37|19
6EZ0|18|A|A|20
6EZ0|18|A|U37|21

Current chains

Chain A

RNA (27-MER)

Nearby chains