IL_6FAI_011

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6FAI|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FAI_011 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.0955

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6FAI|1|2|G|143
6FAI|1|2|U|144
6FAI|1|2|A|145
6FAI|1|2|U|146
6FAI|1|2|A|147
6FAI|1|2|A|148
6FAI|1|2|C|149
*
6FAI|1|2|G|165
6FAI|1|2|C|166
6FAI|1|2|U|167
6FAI|1|2|A|168
6FAI|1|2|A|169
6FAI|1|2|U|170
6FAI|1|2|A|171
6FAI|1|2|C|172

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-A

Chain Y

40S ribosomal protein S24-A