IL_6FAI_039
3D structure
- PDB id
- 6FAI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FAI_039 not in the Motif Atlas
- Geometric match to IL_4WF9_012
- Geometric discrepancy: 0.3691
- The information below is about IL_4WF9_012
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_49061.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
6FAI|1|2|U|745
6FAI|1|2|A|746
6FAI|1|2|C|747
*
6FAI|1|2|G|802
6FAI|1|2|A|803
6FAI|1|2|A|804
6FAI|1|2|U|805
6FAI|1|2|A|806
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain H
- 40S ribosomal protein S7-A
- Chain L
- 40S ribosomal protein S11-A
- Chain W
- 40S ribosomal protein S22-A
- Chain X
- 40S ribosomal protein S23-A
Coloring options: