IL_6FAI_042

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUUGG*CCAUC

Length

11 nucleotides

Bulged bases

6FAI|1|2|U|820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FAI_042 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3821

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6FAI|1|2|G|819
6FAI|1|2|U|820
6FAI|1|2|U|821
6FAI|1|2|U|822
6FAI|1|2|G|823
6FAI|1|2|G|824
*
6FAI|1|2|C|848
6FAI|1|2|C|849
6FAI|1|2|A|850
6FAI|1|2|U|851
6FAI|1|2|C|852

Current chains

Chain 2

20S ribosomal RNA

Nearby chains