IL_6FAI_054

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FAI_054 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0952

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6FAI|1|2|G|1111
6FAI|1|2|G|1112
6FAI|1|2|A|1113
6FAI|1|2|G|1114
6FAI|1|2|U|1115
6FAI|1|2|A|1116
6FAI|1|2|U|1117
6FAI|1|2|G|1118
*
6FAI|1|2|U|1129
6FAI|1|2|G|1130
6FAI|1|2|A|1131
6FAI|1|2|A|1132
6FAI|1|2|A|1133
6FAI|1|2|C|1134

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23-A

Chain k

Ribosome biogenesis protein TSR1