IL_6FAI_070

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

6FAI|1|2|A|1346, 6FAI|1|2|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FAI_070 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.2974

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6FAI|1|2|A|1345
6FAI|1|2|A|1346
6FAI|1|2|U|1347
6FAI|1|2|A|1348
*
6FAI|1|2|U|1377
6FAI|1|2|U|1378
6FAI|1|2|C|1379
6FAI|1|2|U|1380

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16-A

Chain U

40S ribosomal protein S20