IL_6FAI_091

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGUUG*CAACGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FAI_091 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.2414

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6FAI|1|2|C|646
6FAI|1|2|G|647
6FAI|1|2|G|648
6FAI|1|2|U|649
6FAI|1|2|U|650
6FAI|1|2|G|651
*
6FAI|1|2|C|683
6FAI|1|2|A|684
6FAI|1|2|A|685
6FAI|1|2|C|686
6FAI|1|2|G|687
6FAI|1|2|G|688

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain W

40S ribosomal protein S22-A