IL_6FAI_096

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCAU*GUGAU

Length

9 nucleotides

Bulged bases

6FAI|1|2|A|1436

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FAI_096 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.3138

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6FAI|1|2|G|1273
6FAI|1|2|C|1274
6FAI|1|2|A|1275
6FAI|1|2|U|1276
*
6FAI|1|2|G|1433
6FAI|1|2|U|1434
6FAI|1|2|G|1435
6FAI|1|2|A|1436
6FAI|1|2|U|1437

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain i

Essential nuclear protein 1

Chain k

Ribosome biogenesis protein TSR1