IL_6FEC_009

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

UGGUU*GAA

Length

8 nucleotides

Bulged bases

6FEC|1|A|G|113

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FEC_009 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.3256

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6FEC|1|A|U|112
6FEC|1|A|G|113
6FEC|1|A|G|114
6FEC|1|A|U|115
6FEC|1|A|U|116
*
6FEC|1|A|G|337
6FEC|1|A|A|338
6FEC|1|A|A|339

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S11

Chain I

40S ribosomal protein S4, X isoform

Chain o

40S ribosomal protein S8