IL_6FEC_012

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FEC_012 not in the Motif Atlas

Geometric match to IL_1YZ9_002

Geometric discrepancy: 0.191

The information below is about IL_1YZ9_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6FEC|1|A|U|152
6FEC|1|A|G|153
6FEC|1|A|U|154
*
6FEC|1|A|A|164
6FEC|1|A|G|165
6FEC|1|A|A|166

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain q

40S ribosomal protein S6

Chain s

40S ribosomal protein S24