IL_6FEC_017

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GAUC*GAC

Length

7 nucleotides

Bulged bases

6FEC|1|A|A|304

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FEC_017 not in the Motif Atlas

Geometric match to IL_5TBW_044

Geometric discrepancy: 0.2963

The information below is about IL_5TBW_044

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6FEC|1|A|G|303
6FEC|1|A|A|304
6FEC|1|A|U|305
6FEC|1|A|C|306
*
6FEC|1|A|G|325
6FEC|1|A|A|326
6FEC|1|A|C|327

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S4, X isoform

Chain q

40S ribosomal protein S6