IL_6FEC_020

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6FEC|1|A|C|359

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FEC_020 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2829

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45649.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6FEC|1|A|U|356
6FEC|1|A|U|357
6FEC|1|A|U|358
6FEC|1|A|C|359
6FEC|1|A|G|360
6FEC|1|A|A|361
*
6FEC|1|A|U|383
6FEC|1|A|G|384

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S11

Chain o

40S ribosomal protein S8