IL_6FEC_022

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FEC_022 not in the Motif Atlas

Homologous match to IL_4V88_405

Geometric discrepancy: 0.1539

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

6FEC|1|A|G|427
6FEC|1|A|G|428
6FEC|1|A|A|429
*
6FEC|1|A|U|444
6FEC|1|A|A|445
6FEC|1|A|C|446

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S4, X isoform

Chain o

40S ribosomal protein S8

Chain q

40S ribosomal protein S6