IL_6FEC_024

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

6FEC|1|A|U|478

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FEC_024 not in the Motif Atlas

Geometric match to IL_5TBW_146

Geometric discrepancy: 0.3496

The information below is about IL_5TBW_146

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6FEC|1|A|U|477
6FEC|1|A|U|478
6FEC|1|A|A|479
*
6FEC|1|A|U|501
6FEC|1|A|A|502

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S4, X isoform

Chain K

40S ribosomal protein S9

Chain s

40S ribosomal protein S24