IL_6FEC_051
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GCG*CC
- Length
- 5 nucleotides
- Bulged bases
- 6FEC|1|A|C|1105
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FEC_051 not in the Motif Atlas
- Geometric match to IL_3SN2_001
- Geometric discrepancy: 0.2813
- The information below is about IL_3SN2_001
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 60
Unit IDs
6FEC|1|A|G|1104
6FEC|1|A|C|1105
6FEC|1|A|G|1106
*
6FEC|1|A|C|1119
6FEC|1|A|C|1120
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 2
- Eukaryotic translation initiation factor 3 subunit C
- Chain e
- 40S ribosomal protein S17
- Chain f
- 40S ribosomal protein SA
- Chain i
- 40S ribosomal protein S3a
Coloring options: